PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055304-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 290aa    MW: 32123.5 Da    PI: 5.6118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055304-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.8e-082242246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                      + W++Ia+ ++ gRt++++k++w +
  PSME_00055304-RA  2 P-WSLIAAQLP-GRTDNELKNYWKT 24
                      5.*********.***********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.699130IPR017930Myb domain
SuperFamilySSF466894.81E-6233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-10330IPR009057Homeodomain-like
CDDcd001672.04E-5324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPWSLIAAQL PGRTDNELKN YWKTCIKKKL NLKHHLSCSS SSFSSKSNVT DTISHIRTQS  60
NSNSVSDDAH HVITSSQSFQ QCMDVLPEGS QPPNNAFNVV NNGENLWCVP GVMDSRHIQL  120
EDQIDHEFSV DPNPTNNQEI CYTNLWSNAS SLHIQEGFSS PAAFISPSLH AKWSTSDQLI  180
LDSCSNTTLR HHKAHCFPDI SLGLTGINIP ALIESDSAKG KLENDENHIM IDYSNATDSS  240
DIVDPGRAYT SHEGGVSILD KYYGSLCQLY SALNPHYQFS WPAGEFSQIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-07myb domain protein 7